There is still some legitimate Kelly criticism, and I'm a huge supporter.
He's very aggressive, and it's obvious that although he won't admit it, he did tone down the aggressiveness after the Tulsa game. Granted, he was working with a freshman quarterback, but don't kid yourself--he knows whose fault that game was and it wasn't necessarily Tommy Rees' less-than-perfect throw to Floyd.
My grades for Brian Kelly's first season, compared to how I view Charlie Weis' entire tenure:
Attitude and Professionalism: A+ (B)
Recruiting: A (A)
Player Development: A (C+)
Strategy: B+ (B)
Game Management: B+ (A)
In my opinion the Navy game and the Tulsa/Michigan calls hurt him in the strategy and game management.
Before you tear into me, I think I could make an argument for being a top ten coach in the country right now, and probably even in the top five if I being my A-game.

I think he's going to be at Notre Dame for a long time and have myriad wins and great successes. I am merely playing devil's advocate here.